The corals’ polyps grow by creation of calcium carbonate cups called calices in which the polyp sits. Every couple days a new calicix is formed on top of the old one separated by wall called septa. Over many generations this extension forms the large calciferous structures of corals and ultimately coral reefs. The polyps deposit aragonite (CaCO3) from the calcium ions in the seawater, forming a massive limestone exoskeleton in the end. The rate of deposition varies greatly between species and environmental conditions and can vary from a few millimeters to several centimeters per year. This is light dependent, with nighttime production 90% lower than that during the middle of the day.
Ocean acidification is the process of continuing decrease in the pH of the Earth's oceans (increasing acidity), caused by their up take of carbon dioxide from the atmosphere perhaps better thought of as the oceans becoming less alkaline because the pH of the surface ocean is presently 8.1, i.e. slightly alkaline or basic on the 0-14 pH scale. Dissolving CO2 in seawater increases the hydrogen ion (H+) concentration in the ocean, and thus decreases ocean’s pH. The oceans have taken up nearly one third of the total anthropogenic CO2 produced in the past 200 years. Between 1751 and 1994 surface ocean pH is estimated to have decreased from approximately 8.179 to 8.104 and models are forecasting a pH as low as 7.824 in 2100. While these changes sound small a drop of 0.3 pH units amounts to a doubling in H+ concentration. This is because pH is measured on a logarithmic scale like earthquake intensity where each unit change in pH means a 10-fold change in H+ concentration.
Coral bleaching occurs when the corals lose their color, due to stress-induced expulsion of the symbiotic unicellular algae. The corals forming the structure of the great reef ecosystems of tropical seas depend on a symbiotic relationship with photosynthesizing unicellular algae called zooxanthellae living within their tissues. Zooxanthellae give the coral its particular coloration and, in stressful conditions, corals may force out their zooxantheallae, which leads to a lighter or completely white appearance. Once bleaching begins, corals tend to continue to bleach even if the stressor is removed. If the coral colony survives, it often requires weeks to months for the remaining symbiont population to return to a normal density.